Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10002650 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10002650 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18421
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (26.92%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

18421

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (26.92%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003835	Metagenome / Metatranscriptome	466	Y
F010393	Metagenome / Metatranscriptome	304	N
F017728	Metagenome / Metatranscriptome	239	Y
F018620	Metagenome / Metatranscriptome	234	Y
F028945	Metagenome / Metatranscriptome	190	Y
F045652	Metagenome / Metatranscriptome	152	N
F061284	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000265010	F028945	N/A	MKVRFLKSVSGNGFHYRKNAVVEIHSDEMLTDFLNAGFCEAIAEAPKARAKKAVKKNTTKETR
Ga0206125_1000265014	F017728	N/A	MYYTTMTNDSVHYKPNMEPVDDISVGDIIEMTRTGKEFLVESITPSGIVLKECTTYVSFSRSALNERLKRNSAIHKSI
Ga0206125_1000265016	F018620	AGGA	MMKLEDARELGLMLFENGFTPWIAETGDGYIVRVLLDGEIINVFRTDLEANKKN
Ga0206125_1000265023	F045652	GAG	LIRGRGGRRAQCKHCDKRYSEQRGLNIPQEGGNYKLTNQTMMNHMYIHFGWWESKITAVERDQQRRDVRKYYKEEQQTNNK
Ga0206125_1000265024	F003835	N/A	MKIDLKVRNTIAQLIVDMEIGESKPIRKHEMVPVIKEVNDTALISHAIRFVKNADGEVIAIKKYRKTAIEKRFERDDQGMQ
Ga0206125_1000265025	F061284	N/A	MKYEDYQRFEELAFDHLLKRYGWKIHTTPKYALIDGVATKNGEVTHIVEFKSRNESLESMERFGTYLISYDKILNGIEMSRMMCVPFILIVYLIKDGVVIGLELGDEYGVAVPMEIKETRTQKSIDGGEAIRRNAYIDIEKFHIL
Ga0206125_100026507	F010393	GGA	MMSARSKRTGGGSGGAFIGFDEKDIKKEFERAFKELENLHDGVTTAQIRRIARKSLKPMLKAYKDEIKDIDSGTFKVYRNGGIYAEITKGQLKKSMGIITTRVNRGATFASLQVGPRVKRAFSDPEKGGWFAHFLEYGYLRDGQYNGPNKGFARRARTSNSAGVGNEFKRLMRGFLNKQVKAARI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10002650

Overview

Ecosystem & Geography

Associated Families

Sequences