NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10002650

Scaffold Ga0206125_10002650


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10002650 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18421
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (26.92%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003835Metagenome / Metatranscriptome466Y
F010393Metagenome / Metatranscriptome304N
F017728Metagenome / Metatranscriptome239Y
F018620Metagenome / Metatranscriptome234Y
F028945Metagenome / Metatranscriptome190Y
F045652Metagenome / Metatranscriptome152N
F061284Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0206125_1000265010F028945N/AMKVRFLKSVSGNGFHYRKNAVVEIHSDEMLTDFLNAGFCEAIAEAPKARAKKAVKKNTTKETR
Ga0206125_1000265014F017728N/AMYYTTMTNDSVHYKPNMEPVDDISVGDIIEMTRTGKEFLVESITPSGIVLKECTTYVSFSRSALNERLKRNSAIHKSI
Ga0206125_1000265016F018620AGGAMMKLEDARELGLMLFENGFTPWIAETGDGYIVRVLLDGEIINVFRTDLEANKKN
Ga0206125_1000265023F045652GAGLIRGRGGRRAQCKHCDKRYSEQRGLNIPQEGGNYKLTNQTMMNHMYIHFGWWESKITAVERDQQRRDVRKYYKEEQQTNNK
Ga0206125_1000265024F003835N/AMKIDLKVRNTIAQLIVDMEIGESKPIRKHEMVPVIKEVNDTALISHAIRFVKNADGEVIAIKKYRKTAIEKRFERDDQGMQ
Ga0206125_1000265025F061284N/AMKYEDYQRFEELAFDHLLKRYGWKIHTTPKYALIDGVATKNGEVTHIVEFKSRNESLESMERFGTYLISYDKILNGIEMSRMMCVPFILIVYLIKDGVVIGLELGDEYGVAVPMEIKETRTQKSIDGGEAIRRNAYIDIEKFHIL
Ga0206125_100026507F010393GGAMMSARSKRTGGGSGGAFIGFDEKDIKKEFERAFKELENLHDGVTTAQIRRIARKSLKPMLKAYKDEIKDIDSGTFKVYRNGGIYAEITKGQLKKSMGIITTRVNRGATFASLQVGPRVKRAFSDPEKGGWFAHFLEYGYLRDGQYNGPNKGFARRARTSNSAGVGNEFKRLMRGFLNKQVKAARI

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