Basic Information | |
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Taxon OID | 3300020165 Open in IMG/M |
Scaffold ID | Ga0206125_10002650 Open in IMG/M |
Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18421 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (26.92%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003835 | Metagenome / Metatranscriptome | 466 | Y |
F010393 | Metagenome / Metatranscriptome | 304 | N |
F017728 | Metagenome / Metatranscriptome | 239 | Y |
F018620 | Metagenome / Metatranscriptome | 234 | Y |
F028945 | Metagenome / Metatranscriptome | 190 | Y |
F045652 | Metagenome / Metatranscriptome | 152 | N |
F061284 | Metagenome | 132 | N |
Protein ID | Family | RBS | Sequence |
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Ga0206125_1000265010 | F028945 | N/A | MKVRFLKSVSGNGFHYRKNAVVEIHSDEMLTDFLNAGFCEAIAEAPKARAKKAVKKNTTKETR |
Ga0206125_1000265014 | F017728 | N/A | MYYTTMTNDSVHYKPNMEPVDDISVGDIIEMTRTGKEFLVESITPSGIVLKECTTYVSFSRSALNERLKRNSAIHKSI |
Ga0206125_1000265016 | F018620 | AGGA | MMKLEDARELGLMLFENGFTPWIAETGDGYIVRVLLDGEIINVFRTDLEANKKN |
Ga0206125_1000265023 | F045652 | GAG | LIRGRGGRRAQCKHCDKRYSEQRGLNIPQEGGNYKLTNQTMMNHMYIHFGWWESKITAVERDQQRRDVRKYYKEEQQTNNK |
Ga0206125_1000265024 | F003835 | N/A | MKIDLKVRNTIAQLIVDMEIGESKPIRKHEMVPVIKEVNDTALISHAIRFVKNADGEVIAIKKYRKTAIEKRFERDDQGMQ |
Ga0206125_1000265025 | F061284 | N/A | MKYEDYQRFEELAFDHLLKRYGWKIHTTPKYALIDGVATKNGEVTHIVEFKSRNESLESMERFGTYLISYDKILNGIEMSRMMCVPFILIVYLIKDGVVIGLELGDEYGVAVPMEIKETRTQKSIDGGEAIRRNAYIDIEKFHIL |
Ga0206125_100026507 | F010393 | GGA | MMSARSKRTGGGSGGAFIGFDEKDIKKEFERAFKELENLHDGVTTAQIRRIARKSLKPMLKAYKDEIKDIDSGTFKVYRNGGIYAEITKGQLKKSMGIITTRVNRGATFASLQVGPRVKRAFSDPEKGGWFAHFLEYGYLRDGQYNGPNKGFARRARTSNSAGVGNEFKRLMRGFLNKQVKAARI |
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