Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10002148 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10002148 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21266
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (15.38%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

21266

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (15.38%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004461	Metagenome / Metatranscriptome	437	Y
F009032	Metagenome / Metatranscriptome	324	Y
F010877	Metagenome / Metatranscriptome	298	Y
F027314	Metagenome / Metatranscriptome	195	Y
F084717	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100021481	F009032	N/A	MNTFRKYEFGSQGAATTKINALGVDEEGNPTHSHSIVRLGHIVVTEGTYDDEGEELTAP
Ga0206125_1000214816	F084717	N/A	VNDLTTIYELFEQFGANHSMVSEFKLLNSLDDLENIQINHRGLFIALEDANISRDGGSPIYDVNFNIVIVDRVGVDEPLSLINSNQENLFVMGQLQDYFIQNLDGEQSFQEVSMRGFSSEDYNITASVSNATFVVGRNPYLRDIDI
Ga0206125_1000214820	F010877	N/A	MTQKELMLALAGSGIPKNDIKKEMFSFYNSMVGKSKYFSRQENPKTACGSCIQRVKTSIWKWYHSDETAPTYSELEFTGRLGAHNIPLYKVVK
Ga0206125_100021488	F027314	N/A	MACTLTLPNDITYACTDVAIGGIIELHIANRDAVIAGTILTKDDADRKITNGTALAANAVTQISFNNKDGFSVFSEVKTVSADGIVSTVPTVSVELPKMTTEKITALNDISKGGAELVAFVRTAAGTYHVVGLDYGLYAGTVDANSGTGRSEKNRFQLTLTGDEQGLSYGIEGADEAAIKAIFDTIVGN
Ga0206125_100021489	F004461	N/A	MSIVISNLPYGDRRPDLFIDTMVKSAAVLNRFRLVDGVKAKVNVPIFDATLSFGSDLCVFDGNSAATIGEKEMTVTTYKWSFLNCKNALESSYRGLLLKKGQNNPETMDADFKDWVFDYFAKLSAEKALTVAGTALTTEMAADAAVLDYDTNAALTSANILDKLEGAYETMSDVMLAAVYGDADRDFKPAIFLGTAAMQHYQIAIAGLYTTTPQGVVEGGVPNYYGMEVIHFPSMPANEFMIAAAQNIVMLTDEYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGDEIVYAKNFA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10002148

Overview

Ecosystem & Geography

Associated Families

Sequences