Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10001873 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10001873 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23375
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (87.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

23375

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (87.50%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F040106	Metagenome / Metatranscriptome	162	N
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000187318	F040106	GGA	MSMQKSYCKQMRYSGPESLAPSDATKFDVLIQMEVLAGCDHGCLGCFVDKNIDPAMNQMIIDRAKELTDGVKRTGLNLREFVIGPTDFFTAENTESVLNNSVVQEIMREHTGARIAAPAKFDKVSMDKLEHIFSILDDEDKYRKEMIIEFIMPIGRVGEMLDDDDYFDEVMRKVEFFKNDTPKQMDWSWTLQASNVVGKKIDKETYNRIIDKSVNEYNTIVEMNPAFSRARSQLIKRSNLFAWNNFLGKVIDEDNANKTVMSMANLYCNSINFIGLTIVPGENGPTTHLNVMLHEQAFFLDNKNLDVTGLTFEEILQRKNELVTKGINKSSKVKDCSDCQYAVACASRLIFEAQDSLNIDGCVLNKDILEHYNPYDFTWNDDAERAMG
Ga0206125_1000187321	F042905	AGGA	MRVQLNGSYAGYYSYDPEHSPINQDFLRTEINLDILHGCDQMCPGCFIPRKNLTNPDQLKNLYELLVKGDYHPDEIVIGPTDIFDAQNFNEIMNHPYMKKLYEISAIGYTSTLLQDYDSIHYKLKKIWDLYYHIKRIPDIDFKIVLDVNKYLDNELDDWYRNLELFKSGSVQFRVNYTKDVFNRIGYNELCERVYKDFNAPVVITPSFLTDRNARGKVEQYLSNFRNDMLAQKIDPKWQNLYTFFDAKFNGFGCQNYSFYNGKLYVNPFLYDAIIQRTPFFETTMDENKLYQNIEYAQQVDDCNGCEFMMSCAERNVHMYMESRNIDQCVAMKEYMHASH
Ga0206125_1000187322	F042906	N/A	MPLIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDEHQLDKAKDFIRSITDQGILVDEMLIGPTDFLASENFYEVMPHLLDIINENSPILAFVSTLIDGDIERFVEFINEHVNLDTEIEIGIATNPYKFFEEKYLQHISDMLYYIDQNVKHEVTYTFVVNIRDYGLDYTTLHDKAVEKFQTILDFVPSVSRSHKPNIILATLDKFNEYFNVLSLDTKLNNIMVDHSHAGMNYQVLNYKKGDWYLSPFMYENMAIYDPMFKIESFDDVYTNVDTQIERAKGTECENCPLFTSCYNRKIILLRDYLGVDRCIAPKENMLRNIHNYNGPAQTMYEWDGYSVENDKNGYRKRFLVTKDDDPELERLRKISYVS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10001873

Overview

Ecosystem & Geography

Associated Families

Sequences