Scaffold Ga0194037_1028644

Overview

Basic Information

• Taxon OID: 3300020164
• Scaffold ID: Ga0194037_1028644
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L304-6m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2324
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.659
  • Long. (^o): -93.748

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F014142	Metagenome / Metatranscriptome	265	Y
F066779	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194037_10286441	F014142	AGGA	MTSLTVITEPNHSMASSNTKNNNVFRLSNGNYISRMAYVYMVADENLISHRYLTPAESAWVFAHRVA
Ga0194037_10286444	F000684	N/A	MTLSGYTYQIGDLFTTSKTGVTGRIAAFSPLSNKVTRVNLVLANGQRRFAMVKTTK
Ga0194037_10286446	F066779	AGGA	MFSLSYKIEYNTNPNYPLSKEFGNCLGVLCPTEEYANNMLDLLSLRGTILETNLIELENYTPSKRVVVATTRSWE