Scaffold Ga0211735_10379601

Overview

Basic Information

• Taxon OID: 3300020162
• Scaffold ID: Ga0211735_10379601
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1732
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 8 to 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F001538	Metagenome / Metatranscriptome	674	Y
F012435	Metagenome / Metatranscriptome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211735_103796011	F001538	GGAG	MIETIRLFPTVQASGYPDKHDLAQAKLEKQHEANKIVELAKQKQVQLQDIGFEIYCKKVVQERLRME
Ga0211735_103796012	F000332	N/A	MRWLILLLLLGLVGAVAKNGCYVREFWSIAYTIHNPSERHQQMSMWLTNNVRFCRSQDLAVIWNNLAEWAGTADSAELRTKVIHGYKDALEREKK
Ga0211735_103796013	F012435	N/A	MRLRLYKSLDMSDIDLVKYGVLWQKVESMEAKIDKLEANMETLIALANKGRGGFWMGMALVSGVSSIFGYISHYWSK