Basic Information | |
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Taxon OID | 3300020162 Open in IMG/M |
Scaffold ID | Ga0211735_10244495 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 819 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 8 to 14 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F012978 | Metagenome / Metatranscriptome | 275 | Y |
F013085 | Metagenome | 274 | Y |
F016809 | Metagenome / Metatranscriptome | 244 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211735_102444951 | F016809 | N/A | FMKQQLTGSIGGDEDFLYEQYIAQEQMNEEYWQWKNSESHSIFPDEVQYDDEYYKSSYLPTPDEEAENYKQTKQNGNT |
Ga0211735_102444952 | F013085 | N/A | MEILSEIIEASNHMIDALEETDFFVETPFIDRIPLKRALQIAMQRKWEQEDDMFLNDAEFLEVCQSVSNKSIGKTIEDLVDKGALNMSINEDGEILYSANKDFQFDKYEDEDEIQ |
Ga0211735_102444953 | F012978 | N/A | MKMKFNKTDDELKHMSEDELFEYLDAKALHLKQHTSPLSSYKTKKFASIGAAISNTEFDYDSVKQIAKENEQKGYEKFIKDKNKNNE |
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