Scaffold Ga0211735_10063910

Overview

Basic Information

• Taxon OID: 3300020162
• Scaffold ID: Ga0211735_10063910
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2111
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 8 to 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009140	Metagenome / Metatranscriptome	322	Y
F012211	Metagenome / Metatranscriptome	282	N
F044970	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211735_100639103	F044970	AGG	MSDFNDYATMLIAIEQKTKALESKCLNKNYAGFTADIQTIQSQLTLLTMWITQAQCEQVRENTYRILNKV
Ga0211735_100639105	F012211	AGGAG	MPTDEERFKYECWAVVQELDPEDIADAIGDSVALVEAIKANHAEDVASIVMNRVELKVRRRAELRVFDVVKTQWIDDIEELQHYRNLRIERVQKALDERKIMEAKMDAPFQQMFDE
Ga0211735_100639106	F009140	AGGTGG	MLEMTHSYTDNNSVSFHYQRYLPDLEQFGYVINHQEKWHLTEYGRMEMNRAISGAAMRIENGSVKEIYDGKELRRNVFRRGCYDFLQLPSRFGDNFVPRKTPT