Scaffold Ga0211726_10993450

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10993450
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3099
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F034149	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_109934504	F000345	GAGG	MTDQQPNEFGKALQEWWDSDAFKELQKANKEAKERALEKYHMLSEEDKIDMVEAITHIICKAESEGTSHRGLQSALGIYPGGFWVDHLMDVHNALWSYYHDQKKEQELKDDLDSLENFMSKKDETELS
Ga0211726_109934507	F034149	GAGG	MTISQGLVSEENEDPGFKIIHLSFRKRESIHLYGGPVDYYIGNIVFRLTDPDAINRMKYYMQENEDLRVAPDEDLLNKYYKDLHFVFGESEKLNGEDDGESYTPLDIVNKQGIKDEDVFIRAHRRNMAPLHDFIQYNEKFDCYRMHEYFQDTPVVRGIIQYLQDMK