Basic Information | |
---|---|
Taxon OID | 3300020161 Open in IMG/M |
Scaffold ID | Ga0211726_10755288 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 20942 |
Total Scaffold Genes | 40 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (52.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 14 to 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007028 | Metagenome / Metatranscriptome | 359 | Y |
F090401 | Metagenome / Metatranscriptome | 108 | Y |
F101035 | Metagenome / Metatranscriptome | 102 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211726_1075528817 | F101035 | AGG | MEAIFVALIAAVGGILAALVQMGRKENKDDHNVVANLLVNVKDDIIHLHQKLDHLDDQVDKVDDKIDVHLKSHRGK |
Ga0211726_1075528823 | F007028 | AGG | VPKISKNALEQSIDSPLDQVVNLMTQEITVSTNPVFICGVNRKINIGNFENIDVYAGITIPLTDIDPSDREALSEAVKQAAADGFGIVSRETGERYSIIKESQQGK |
Ga0211726_107552883 | F090401 | AGGAG | MARKYTGNSDGDGKGAKPGTQKLIELCGKRWKFSNLGAYSNRLMRNSNTAGKKLGDPGMEKWLSVHATGRACDVGYTDRKAAVEAWDWFLKYSKELGIEEIHDYAFDSDKADKNVGYGRGYRCSRGEGSKGVKVYDAKDNAGSFGGKWLHFELSPEMANDAAKFEAAWRALPKPGAA |
⦗Top⦘ |