NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10668960

Scaffold Ga0211726_10668960


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10668960 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1797
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028509Metagenome / Metatranscriptome191Y
F051122Metagenome / Metatranscriptome144N
F058141Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0211726_106689602F051122N/AMTNQEYTQQLSSLKSTLEIMLIEGEKKGQEISVAYECGLYIGTIKAVISHLSELVNDPKG
Ga0211726_106689603F058141N/AMKIRIENIECRLSLDTYEFVRWYPNKYYGTKNKLIAEGYELHNIHDDNFILTKGNHTIHDSCFLNPEGCFTIATIVYNKKEYYTEIKSVGNRLLGLTKKERNYFFEVYKYADKQIRKENKSND
Ga0211726_106689604F028509N/AMENKVKVSIVIQSMLTDAMVEVHHQELMEEGQERLRFVKYLVAYYPNTDQEIMVDFVYEQFKKFDK

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