Scaffold Ga0211726_10400109

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10400109
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2472
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004840	Metagenome / Metatranscriptome	421	Y
F007263	Metagenome / Metatranscriptome	354	Y
F050376	Metagenome / Metatranscriptome	145	Y
F083720	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_1040010911	F050376	AGTAGG	MTLEEYKAHVEAQRKESLLKAIATLSQANATMSQLFNTKEAD
Ga0211726_104001096	F004840	AGGAG	MYKITCQYDFEQSPHWSATYENEFGAWESFFRFTDWGLANEYSTVNIYTPTGKCYTKVFYRNGEVQVKA
Ga0211726_104001097	F007263	AGG	MMTTIYIDKTEFYYIKNERQFHCNESQFTYVCKTHGEEMGCNYCEFDYSKDCEEQH
Ga0211726_104001098	F083720	AGAAGG	MSANLYTVQSLLVGKIYHSKTLRGEIISAEPHPKAVWYDGAEAYLVEVRNPNAIRNSFRTVAVKVGA