Basic Information | |
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Taxon OID | 3300020161 Open in IMG/M |
Scaffold ID | Ga0211726_10245147 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1699 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 14 to 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000903 | Metagenome / Metatranscriptome | 843 | Y |
F003182 | Metagenome / Metatranscriptome | 502 | Y |
F091314 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211726_102451471 | F091314 | N/A | DYWTTKHGDVPSYKTRDEAEQAQPVTWEIPAESAPSCSHGSMRWNQSKPDALKAWAGYFCNEKVKEKQCKPLWYVLTSDGTFKPQV |
Ga0211726_102451473 | F000903 | GGAGG | MNKLIEIQCIISAMQHCKDREVDHPTRFQKNLSWFEYVAQMAESMAAELVVAKALGYDYQPGITWDKSKADVGEHIEVKWSANPTSNLWIQESDRDDRDIAVLVTGHSPKLHINGWIPVAIAKKPRYKNTSQNNWTVPQTNLQPIETLQWSNYAHPAI |
Ga0211726_102451474 | F003182 | GGAG | MHILLFDCAICKKLYGKPKQRHGLKKGSELTEHEWFAQCMGCGTFGIKIVDDKRIKELSDGNL |
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