Scaffold Ga0211726_10127335

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10127335
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1855
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023107	Metagenome / Metatranscriptome	211	Y
F066766	Metagenome / Metatranscriptome	126	N
F091353	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_101273351	F091353	GGA	MIKTAVDLFDEVCNAIDRGDLDKQLLPLKRIIGERLLLVSVYPNVKDFIVGDRVVLNETCGTKSLIGEEGTVVGIRRSKISITFDKPKGRFARTNSKGEIYSANAVVPISIVDKI
Ga0211726_101273353	F023107	AGG	MDNILPSRTVMFVGDYFTLMTTIVLDEKLRNMGEADNDFAVRIASVFMKEYYGFDVASVANSIGVVDEDGVEV
Ga0211726_101273354	F066766	AGG	MIKEVELEYTVETLAKLVRDNYGKNAVEYLVGRLTSVITEKQLKVLIDYEKGVNG