Scaffold Ga0211726_10091670

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10091670
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7901
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F011077	Metagenome / Metatranscriptome	295	Y
F020851	Metagenome / Metatranscriptome	221	Y
F037701	Metagenome / Metatranscriptome	167	Y
F054581	Metagenome	139	Y
F098668	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_1009167011	F020851	GGA	MSEDIVDLAISMTEIDTGMQLPLEEREAMKQRILARLEDIN
Ga0211726_1009167012	F037701	GGA	MIKSKEWRVSNRVWVSAGFNPRRIALGFSIDKFYANIDFLWFWVTLEY
Ga0211726_1009167013	F011077	GAG	MITDNLTWAEEENNLWKGWTYSLEKNRYYFNDVGNESLAAFWADEFLNQAYQ
Ga0211726_1009167014	F098668	AGGAG	MENISNLISASGAFNLDEAVRAIAEIHIPEGTLVHRCQEDKKPWPCPTIKAIKKELTK
Ga0211726_100916705	F004475	AGGAG	MKDWTKELTDEQKEQVWYFIVETVKEIREQIAQDILATSDIWMARGQLKSRKTSKAFLVSAAIARGQNEIK
Ga0211726_100916709	F054581	N/A	MCPNCNNPLIPILYGYSNKKYLDMHKEGLIFLVSTTYHTKHSPTSYCKKCNESFDIRLNSKL