NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_11243773

Scaffold Ga0211733_11243773


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_11243773 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3102
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036677Metagenome169N
F081035Metagenome / Metatranscriptome114N
F082379Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0211733_112437731F081035N/ATPPENLPVVPCSVLFPGDDSITVGNGNRSTVLTVAFRIYLLPVPRMEDKYRDLYTWRSWLRTVFDGAVTISGNAVQVAVTATRLGTDTYADQDYLTVEADAEVTVFDTVTFTA
Ga0211733_112437733F082379AGGAGGMDVVLITLEGEFAGWHAELRKNVSARILLDLESGNAGRALQAFSKMVLSHNFKGLDGKPCDDVLDAPVDALTQTMERWGKGNQADPK
Ga0211733_112437735F036677AGGMASGVVIEGKFDRNYDQLRIGFLKGSNPSAFKRLMTFATLNAARTLQKPMKDAAPKGETGNLKKQVKARKARFNNPAAVVGIKGGRNGVFYGWLVVGGTGSRRSTKNGIVAVKPVKARPFVDDVVKRKTNIDRAVESYSKTISSFLNDEPFRNTILRFKRGNQG

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