Scaffold Ga0211733_10628407

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10628407
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1438
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F002933	Metagenome / Metatranscriptome	519	Y
F004432	Metagenome / Metatranscriptome	438	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_106284072	F004432	GGA	MVTKKPPAKVAPVKRRTSKPKAEQTINVSVAAPSAPKPEAKKDDSALGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRQVILHAITTQDKMPQLAKQENLLAPARSLMKDVDGIVLLIHKANLSTNSRTTVLALNADGSREKTIEGSITSLFNASSDRNSAMVAMLNGEVMCEEFNPSSKVGEWGAKQGVKFMCRGSIPPDMGKFAGYVAIGFKQKPEDIAALKTRINLAATDMSEE
Ga0211733_106284073	F002933	GAG	MISPIHKWYPMLGVADYPTKTDALERRTERLEEEYKQALKMKKVKDKIDDLEFELYVKKAERNQLNLEIFTNRKLDIYA
Ga0211733_106284074	F000332	N/A	KWMRWLILLLLLGLVGAVAKNGCHVREFYGIGYTTHDPTQRHKEMVAWLVQNAEHCKSTDYVVIWNNLAEWSGTSDSTQLRGLVIHGYKEALEREKK