NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10628407

Scaffold Ga0211733_10628407


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10628407 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1438
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000332Metagenome / Metatranscriptome1283Y
F002933Metagenome / Metatranscriptome519Y
F004432Metagenome / Metatranscriptome438Y

Sequences

Protein IDFamilyRBSSequence
Ga0211733_106284072F004432GGAMVTKKPPAKVAPVKRRTSKPKAEQTINVSVAAPSAPKPEAKKDDSALGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRQVILHAITTQDKMPQLAKQENLLAPARSLMKDVDGIVLLIHKANLSTNSRTTVLALNADGSREKTIEGSITSLFNASSDRNSAMVAMLNGEVMCEEFNPSSKVGEWGAKQGVKFMCRGSIPPDMGKFAGYVAIGFKQKPEDIAALKTRINLAATDMSEE
Ga0211733_106284073F002933GAGMISPIHKWYPMLGVADYPTKTDALERRTERLEEEYKQALKMKKVKDKIDDLEFELYVKKAERNQLNLEIFTNRKLDIYA
Ga0211733_106284074F000332N/AKWMRWLILLLLLGLVGAVAKNGCHVREFYGIGYTTHDPTQRHKEMVAWLVQNAEHCKSTDYVVIWNNLAEWSGTSDSTQLRGLVIHGYKEALEREKK

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