Basic Information | |
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Taxon OID | 3300020160 Open in IMG/M |
Scaffold ID | Ga0211733_10422925 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2088 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006842 | Metagenome | 363 | Y |
F027758 | Metagenome | 193 | Y |
F038155 | Metagenome | 166 | Y |
F053128 | Metagenome | 141 | N |
F069714 | Metagenome | 123 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211733_104229251 | F027758 | GAG | MFIDLILVSSWVFGFFFLAGAIAWLADRLASFHLEGMERVRKLQAREKEREGAK |
Ga0211733_104229253 | F038155 | AGAAGG | MERKNGKAWKKKPKVQKKTGRTIGGYSLSKLAIRAIKRGAK |
Ga0211733_104229256 | F053128 | AGGAGG | MKGYFVIDRQDTGWKEGYLWKSIKEIADSIRDYDDYKELEVSNLTHSQLCELWDFEYHRITPANCNKYNVRPSELTREWI |
Ga0211733_104229257 | F006842 | GGAG | MKATPVICGDHLVPISECNCLDYLREIEGSAKRLIQLTKEREEMK |
Ga0211733_104229259 | F069714 | AGGAG | MNIEIKESYMPEYTKAITFECEGKEYLAEVYLGKHCSDYTLYEGNKRLEDKPAWLEKAEQEDANFSFMFFIDNLAWEYEQRKEKV |
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