NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10422925

Scaffold Ga0211733_10422925


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10422925 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2088
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006842Metagenome363Y
F027758Metagenome193Y
F038155Metagenome166Y
F053128Metagenome141N
F069714Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0211733_104229251F027758GAGMFIDLILVSSWVFGFFFLAGAIAWLADRLASFHLEGMERVRKLQAREKEREGAK
Ga0211733_104229253F038155AGAAGGMERKNGKAWKKKPKVQKKTGRTIGGYSLSKLAIRAIKRGAK
Ga0211733_104229256F053128AGGAGGMKGYFVIDRQDTGWKEGYLWKSIKEIADSIRDYDDYKELEVSNLTHSQLCELWDFEYHRITPANCNKYNVRPSELTREWI
Ga0211733_104229257F006842GGAGMKATPVICGDHLVPISECNCLDYLREIEGSAKRLIQLTKEREEMK
Ga0211733_104229259F069714AGGAGMNIEIKESYMPEYTKAITFECEGKEYLAEVYLGKHCSDYTLYEGNKRLEDKPAWLEKAEQEDANFSFMFFIDNLAWEYEQRKEKV

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