NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10216846

Scaffold Ga0211733_10216846


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10216846 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4098
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016783Metagenome / Metatranscriptome244Y
F044369Metagenome / Metatranscriptome154Y
F068435Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0211733_102168463F044369N/AMSKIEHILQKAHKKGIYNETMSLAQNIKNENTKIELADRYEIAYEQAKKYKNGKI
Ga0211733_102168466F016783N/AMTLFAQYDLNMTKLYLWSQFINPLTIFTMKNILLTIGVALVISACSTANFATHPLSVTPTISRQALIYDNHVVIVTKTKMSVEDYNKIIATTVKNKEERIK
Ga0211733_102168469F068435N/AMNKFKYLQLIGTITVFSPIILVVLSVLIFGFGTPTTDEPVEQVVEIKKVDTVPIVQKVKPVVVKPTPIVVKSSLIIKDTTKAVVESLDTVK

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