Scaffold Ga0211733_10216846

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10216846
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4098
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016783	Metagenome / Metatranscriptome	244	Y
F044369	Metagenome / Metatranscriptome	154	Y
F068435	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_102168463	F044369	N/A	MSKIEHILQKAHKKGIYNETMSLAQNIKNENTKIELADRYEIAYEQAKKYKNGKI
Ga0211733_102168466	F016783	N/A	MTLFAQYDLNMTKLYLWSQFINPLTIFTMKNILLTIGVALVISACSTANFATHPLSVTPTISRQALIYDNHVVIVTKTKMSVEDYNKIIATTVKNKEERIK
Ga0211733_102168469	F068435	N/A	MNKFKYLQLIGTITVFSPIILVVLSVLIFGFGTPTTDEPVEQVVEIKKVDTVPIVQKVKPVVVKPTPIVVKSSLIIKDTTKAVVESLDTVK