Basic Information | |
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Taxon OID | 3300020160 Open in IMG/M |
Scaffold ID | Ga0211733_10125832 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 22789 |
Total Scaffold Genes | 47 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (6.38%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000716 | Metagenome / Metatranscriptome | 923 | Y |
F010462 | Metagenome / Metatranscriptome | 303 | Y |
F048248 | Metagenome / Metatranscriptome | 148 | Y |
F074450 | Metagenome / Metatranscriptome | 119 | Y |
F083779 | Metagenome / Metatranscriptome | 112 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211733_1012583230 | F074450 | N/A | MEDYSKADILNALLSLDMKKRTRVLVDQRSYLIGILAYRFMMTEHQIADRINIKRDKVNYNKKLAVQFYNDKLYKQNVYVYAQMFPFDFSVIEVVSVTQRAKRVELDMDKKFYNKLKAAGSILGHKDIRVTIMLFLEKSLKLWDE |
Ga0211733_1012583236 | F000716 | N/A | MEKLKQQVRDYQLHAGKTYMQYEQDKYSAYQNYLYKRALYGLEALNQEELATMCSRKKQRIVNVYKRAQTVLNIAKQKATIHYTNFIFKTLFPKSPLTQMLIDSSETDEKFKNTLTFKDLNIGKDDIITIFISEGILPQNFLSLKEAPVTLPRLKNAEKA |
Ga0211733_1012583238 | F010462 | N/A | MPVMLYQLPNGKVIHLTVEEYLDLTDEDVQYLMSIDYGEHVRDPFTGSAVDQNTKEKYYDFEFLSQDDEDINNIISDDIPFDDIIDLSSDLDI |
Ga0211733_1012583239 | F048248 | N/A | MRISVTYDDTDVAKAFSKIIKDPNAEEFVKLLTPMICTSQQGTEYFFKLMLGNKLPDLIPDGTLCKVPVASLGYGSNKEAIREKFADEDGKVVVTVKEFRGFHEYSQYHIEYTDVLDNGATKKDSTYVQAKDLEVVEEF |
Ga0211733_101258324 | F083779 | N/A | MAKMIFSKEETKNIMMMLQSEDADNHVIAFKTLQNVDFDKYIGELLVLLKFGGHALADWKVGYGKITSKLEKLISDQTPLSSPKTLALITKHKGSKASVELFMEFFIRDMTRMLESIGYPTDKFEINIKFKDDGQTTES |
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