NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10125832

Scaffold Ga0211733_10125832


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10125832 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22789
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (6.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F010462Metagenome / Metatranscriptome303Y
F048248Metagenome / Metatranscriptome148Y
F074450Metagenome / Metatranscriptome119Y
F083779Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0211733_1012583230F074450N/AMEDYSKADILNALLSLDMKKRTRVLVDQRSYLIGILAYRFMMTEHQIADRINIKRDKVNYNKKLAVQFYNDKLYKQNVYVYAQMFPFDFSVIEVVSVTQRAKRVELDMDKKFYNKLKAAGSILGHKDIRVTIMLFLEKSLKLWDE
Ga0211733_1012583236F000716N/AMEKLKQQVRDYQLHAGKTYMQYEQDKYSAYQNYLYKRALYGLEALNQEELATMCSRKKQRIVNVYKRAQTVLNIAKQKATIHYTNFIFKTLFPKSPLTQMLIDSSETDEKFKNTLTFKDLNIGKDDIITIFISEGILPQNFLSLKEAPVTLPRLKNAEKA
Ga0211733_1012583238F010462N/AMPVMLYQLPNGKVIHLTVEEYLDLTDEDVQYLMSIDYGEHVRDPFTGSAVDQNTKEKYYDFEFLSQDDEDINNIISDDIPFDDIIDLSSDLDI
Ga0211733_1012583239F048248N/AMRISVTYDDTDVAKAFSKIIKDPNAEEFVKLLTPMICTSQQGTEYFFKLMLGNKLPDLIPDGTLCKVPVASLGYGSNKEAIREKFADEDGKVVVTVKEFRGFHEYSQYHIEYTDVLDNGATKKDSTYVQAKDLEVVEEF
Ga0211733_101258324F083779N/AMAKMIFSKEETKNIMMMLQSEDADNHVIAFKTLQNVDFDKYIGELLVLLKFGGHALADWKVGYGKITSKLEKLISDQTPLSSPKTLALITKHKGSKASVELFMEFFIRDMTRMLESIGYPTDKFEINIKFKDDGQTTES

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