Scaffold Ga0211733

Basic Information
Taxon OID	3300020160 Open in IMG/M
Scaffold ID	Ga0211733_10125832 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020160 Open in IMG/M

Scaffold ID

Ga0211733_10125832 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22789
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (6.38%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

22789

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (6.38%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 10
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 10

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F010462	Metagenome / Metatranscriptome	303	Y
F048248	Metagenome / Metatranscriptome	148	Y
F074450	Metagenome / Metatranscriptome	119	Y
F083779	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_1012583230	F074450	N/A	MEDYSKADILNALLSLDMKKRTRVLVDQRSYLIGILAYRFMMTEHQIADRINIKRDKVNYNKKLAVQFYNDKLYKQNVYVYAQMFPFDFSVIEVVSVTQRAKRVELDMDKKFYNKLKAAGSILGHKDIRVTIMLFLEKSLKLWDE
Ga0211733_1012583236	F000716	N/A	MEKLKQQVRDYQLHAGKTYMQYEQDKYSAYQNYLYKRALYGLEALNQEELATMCSRKKQRIVNVYKRAQTVLNIAKQKATIHYTNFIFKTLFPKSPLTQMLIDSSETDEKFKNTLTFKDLNIGKDDIITIFISEGILPQNFLSLKEAPVTLPRLKNAEKA
Ga0211733_1012583238	F010462	N/A	MPVMLYQLPNGKVIHLTVEEYLDLTDEDVQYLMSIDYGEHVRDPFTGSAVDQNTKEKYYDFEFLSQDDEDINNIISDDIPFDDIIDLSSDLDI
Ga0211733_1012583239	F048248	N/A	MRISVTYDDTDVAKAFSKIIKDPNAEEFVKLLTPMICTSQQGTEYFFKLMLGNKLPDLIPDGTLCKVPVASLGYGSNKEAIREKFADEDGKVVVTVKEFRGFHEYSQYHIEYTDVLDNGATKKDSTYVQAKDLEVVEEF
Ga0211733_101258324	F083779	N/A	MAKMIFSKEETKNIMMMLQSEDADNHVIAFKTLQNVDFDKYIGELLVLLKFGGHALADWKVGYGKITSKLEKLISDQTPLSSPKTLALITKHKGSKASVELFMEFFIRDMTRMLESIGYPTDKFEINIKFKDDGQTTES

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211733_10125832

Overview

Ecosystem & Geography

Associated Families

Sequences