Scaffold Ga0211733_10092372

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10092372
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1329
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053831	Metagenome / Metatranscriptome	140	N
F063331	Metagenome / Metatranscriptome	129	Y
F088345	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_100923722	F088345	GAG	MDELEKFFLPPDIQSWIMRYDAGSERALVKQVPLTEDNITMIDRLAGMMLVTRRYRGPRHNSRNFTRDCPKKDAERVSVYLRERVA
Ga0211733_100923723	F053831	GAGG	MSNWQKLNYSEDKFKPFHIKLDYCHEEMTLRDIYKYDDDQEWIDKTAQEITDGYKYFVILRARAYLAGVEVGSHSLGGLLFDNTDEMESMMRLDYEGIIAEAVETAKHNLKQMADAMKERVTA
Ga0211733_100923724	F063331	AGGAG	MTDIDNFALLNELKELLRQVDLGDTEQVRSELQNIIDRVQADCDERHRIYLERVERYMGHVDSALS