Basic Information | |
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Taxon OID | 3300020160 Open in IMG/M |
Scaffold ID | Ga0211733_10012101 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2243 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001805 | Metagenome / Metatranscriptome | 631 | Y |
F014609 | Metagenome | 261 | Y |
F028786 | Metagenome / Metatranscriptome | 190 | N |
F099187 | Metagenome | 103 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211733_100121011 | F014609 | N/A | MLNELIGIIGLLVTILVLVIKASMEIGKMKSKLFPNGGSSLADKVTRLQIDVVKIRSTIDSISTELGKPKRKR |
Ga0211733_100121014 | F028786 | AGAAG | MQSFNYKQLSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNAKSKTK |
Ga0211733_100121015 | F001805 | N/A | MIGIDDQVIELTGADKEAFIANREAKAKAKALLETEYKAKQKAREDAIKKLAEVAGLTEEEINAIL |
Ga0211733_100121017 | F099187 | N/A | LSNSNMTNTVRDNLLGVSMDTLLYLDNIPVGLIAEGYNEGFVEGWTWTLGRNNLELAMSVSNSIYSTLDVQWEDYNASIQWQNLANDYRWLDVI |
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