Scaffold Ga0211733_10012101

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10012101
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2243
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F014609	Metagenome	261	Y
F028786	Metagenome / Metatranscriptome	190	N
F099187	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_100121011	F014609	N/A	MLNELIGIIGLLVTILVLVIKASMEIGKMKSKLFPNGGSSLADKVTRLQIDVVKIRSTIDSISTELGKPKRKR
Ga0211733_100121014	F028786	AGAAG	MQSFNYKQLSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNAKSKTK
Ga0211733_100121015	F001805	N/A	MIGIDDQVIELTGADKEAFIANREAKAKAKALLETEYKAKQKAREDAIKKLAEVAGLTEEEINAIL
Ga0211733_100121017	F099187	N/A	LSNSNMTNTVRDNLLGVSMDTLLYLDNIPVGLIAEGYNEGFVEGWTWTLGRNNLELAMSVSNSIYSTLDVQWEDYNASIQWQNLANDYRWLDVI