NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10012101

Scaffold Ga0211733_10012101


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10012101 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2243
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001805Metagenome / Metatranscriptome631Y
F014609Metagenome261Y
F028786Metagenome / Metatranscriptome190N
F099187Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0211733_100121011F014609N/AMLNELIGIIGLLVTILVLVIKASMEIGKMKSKLFPNGGSSLADKVTRLQIDVVKIRSTIDSISTELGKPKRKR
Ga0211733_100121014F028786AGAAGMQSFNYKQLSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNAKSKTK
Ga0211733_100121015F001805N/AMIGIDDQVIELTGADKEAFIANREAKAKAKALLETEYKAKQKAREDAIKKLAEVAGLTEEEINAIL
Ga0211733_100121017F099187N/ALSNSNMTNTVRDNLLGVSMDTLLYLDNIPVGLIAEGYNEGFVEGWTWTLGRNNLELAMSVSNSIYSTLDVQWEDYNASIQWQNLANDYRWLDVI

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