Scaffold Ga0211733_10003384

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10003384
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6603
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008752	Metagenome / Metatranscriptome	328	Y
F009137	Metagenome / Metatranscriptome	322	Y
F033792	Metagenome / Metatranscriptome	176	Y
F073147	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_100033843	F009137	N/A	MNAELSDFCRNYEVNVLNDQKRRARYHPPRFFTDPERADIIRNDIVQYETEKVITLEIPEGRLQTLIEMERKFYKWQRHSQSEVDMFQTLMDKEREEAHYRHTNAAVQKAYEQYSIMLNLAGYQKKF
Ga0211733_100033845	F033792	GGA	MSMIDNNPHSIEDLYAKYLQFTAVMLEEYKDIEIAGVMIAQALSMYRTVLPEEDYQCMIKNIYERRNDVKSFNGT
Ga0211733_100033846	F008752	AGAAG	MSKASTELNPQTPATGILKRSSWGDTMTYQIVCECHDADHDHNVWVEADNTGVTVTTYTTQKSQWWSLNRWRTIWILLTRGYVKYEANIIMTEQQALNYAETLKSAIQDVKNFQKP
Ga0211733_100033848	F073147	AGGAG	MNFELYEVWAMDEAGYEELVETTSSRKQAFEIAEANLELGVFEAIVYQEDENGDLHEIKRFNHG