Scaffold Ga0211734_11276995

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_11276995
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2788
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034112	Metagenome / Metatranscriptome	175	N
F073276	Metagenome / Metatranscriptome	120	N
F100712	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_112769953	F034112	AGGA	MVIFNIGNKAVRYEYPETAADITLEQYIYFIKFLLPQHPKAELEAIQYMNERDTVYEKIKPYARKLKVGIKDENQATVVMQLVRILDTQEVKDNVRRFLPALISQWETNDDELGIRLQIMDEVWEAKERYPYMAKVVNYFTGIPLDACYGKVAESVELKYLTYLYSKIVNAVNTPTDTTYKQLYDFNGKVYTLPEKLMEKSTLLEFTMAAQYDKAVKQIQGGEAEGLLNVMAVLLKPLNEEYSDELFEQNKVDFLQMPLQTSFEVAFFLTKLSEKYTLDLQTSMLQRAMENLN
Ga0211734_112769955	F073276	N/A	MSLVELANIFEAATDSVNGLNGFSFGWASDRVRSQIYTEEGENSTNIFPRVFFAVPTLTNNPVTRRDTYQVTLFFDDLLGYNEQGDVDTTLQITKWSNLIAFAEKFVLHLTTTKTTNSIPEEVNLTLDSFTSIQRLITVQATFNISIKSEC
Ga0211734_112769956	F100712	N/A	MLEGLQKLADDISTLAIEVIAMEWRAQGHELTGSAVKQMETMVKFEINTLVIEGLVPNYMAINNQGVPANKIPYYPNSGRKESEYIKGLMKYVQQRMGKSEKESKGIAFAIASKHKREGMPTKASVTKYSKTGRRTGFIEIALEKNSQKFIELIEASIRFSVEATIESFYKSILNR