Scaffold Ga0211734_11243382

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_11243382
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2395
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009954	Metagenome / Metatranscriptome	310	Y
F016152	Metagenome / Metatranscriptome	249	Y
F031365	Metagenome / Metatranscriptome	182	Y
F082680	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_112433822	F031365	AGAAGG	MANDVIVLTGIKETLKALESFDKQAVRDFTKVINSELGAAKKDAQGLVSSDPPLSGWVTTPPANPRSRGGAGWPAWDQSIIKAGISVSKAERKVRRDYTTSAGALINRSSAGVIYELAGRTNKTPGKNKFISNLNKETFSPSRLIWKIVDRDRDKIEQKVEQALNDAKTTLQKNLEKERG
Ga0211734_112433823	F016152	N/A	MISVETGLSPTDLLDAPDGVLEAIVIYLKEKSKKAGA
Ga0211734_112433824	F009954	AGG	MDGLQIKVKTSDGVEGTYSLRPRSIVAFEQKFGKGFAKLLSEDQKLEHIYFLAWSALKDGGKVVKPWGDAFLDTLDSVELVVDPNLESTETA
Ga0211734_112433828	F082680	N/A	GSGKGSIKTAIESDRTLGGLVDTLRVISAESGTYSSGEQSFLSYRYNLTIWG