Basic Information | |
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Taxon OID | 3300020159 Open in IMG/M |
Scaffold ID | Ga0211734_11153368 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1110 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 12 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F049582 | Metagenome / Metatranscriptome | 146 | Y |
F066729 | Metagenome / Metatranscriptome | 126 | N |
F074804 | Metagenome / Metatranscriptome | 119 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211734_111533681 | F049582 | N/A | NKTKIHKELSNRFRNESDLTVSMMTRAISDLDISNPAALDVMYEDVMFFTGDWPESEGWGSSDTAALIRSVKATLISNGYLREAA |
Ga0211734_111533683 | F066729 | AGGAGG | MTIKVPNNSLWQYIEKDHIDSSIKKTIWEEFVLSHQEEFAEKVSELADEMWSNYNQGAE |
Ga0211734_111533684 | F074804 | AGGAG | MIDSRLSDQRDEFFLDIAKGDLVFLQADDGSEISGIAVERSWVGWVLKGGQEVIEDENYLGHVSLGQLTGVAA |
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