Scaffold Ga0211734_11145030

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_11145030
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12790
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050332	Metagenome	145	N
F090096	Metagenome	108	N
F090332	Metagenome	108	N
F099195	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_111450301	F090096	N/A	NHEARFSKWLAKKTPELVGMTDAEGREILSLANLLRLDALGITPCISEGVAFAGPEHLRSYYQIAPDLIATHGTYSRSTGGGASIIPIVEAAGVSVVGGHDHSQGVSFKTIGGFAGIDEKRTAAISTGMMCRRTELGYLAQHQVSRWAAGFAVIELWGEEAGEWQPDFASWTGSELAWRGKRYAPKSVVK
Ga0211734_1114503016	F099195	GGAG	VSDEEVRQLFKEAAAKEGKSLRQWCKDNGIVYETLIGREIPSDVPLSAVHDHDGSLFGNCPVCTKE
Ga0211734_111450306	F050332	GGAG	MAEFARGPQVSYDVWLSDKKEPKEKEFKTGTKAFEFFASRATDAYTQWRSADKETRGAEPTDKYVYLTLTVFDKKTQEHLYKIYYKVAESKTKNPSEKRPNLHVTGESRNVREYDGKNYEDVTVRDASPLIWTPAEARE
Ga0211734_111450309	F090332	N/A	MPRYEVTRSARAIDDDLDIVQNNDICYLLDGRYGRIYAGLSVRYDAAVAPEGWFFLRETIENRVLNKELVASGLVVLGDKMIVGRRTAQLARVKNG