NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_11135775

Scaffold Ga0211734_11135775


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_11135775 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5348
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001229Metagenome / Metatranscriptome741Y
F001900Metagenome / Metatranscriptome620Y
F005479Metagenome / Metatranscriptome399Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_111357751F001229GAGMNSIVDSVLSMNLDVYRQFEVQDPDTGAILREWNYYKTIPCHAKGVISNSATTRSSDKQIFSNKYLNDQVIQVRTSEKLTSREKVTNIRDSDGNTIWNEINYPNETPTVFEVMGTTPVTDPFGRVIAYSSSMKRSENQQIGQ
Ga0211734_111357752F001900GGAGLDNSGLLVQASSGLERMMHANQSGPLKDSTVAQVSAFVYYEAAVISKLTSSAKFKALFVNTVFNQVSEDFGHYIDALARSKPKSLHHVYEWQKAGDKTGRLFKVNKISEEGLSFRLDYNFLPSRSMVPSSNGKRRHMFKNKASIMEAGNPLVIRPKNSERLVFEIDGETVFMPKGQSVTVKRPGGSAATNQFTLAHSRFFSGRLVNESIKKSGFQRIFSSSLTKALRVPSNIKKVQYSFSPNLIRSQADEALAASFGGAM
Ga0211734_111357756F005479N/AMPELIATLKALKKKEHGERKFLASLKGVDLGEYEEENEKGSSFEEIELRAAGIHANPNDVVSLQGRFAARAGFGIGEGLGYTKE

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