Scaffold Ga0211734_11135775

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_11135775
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5348
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F005479	Metagenome / Metatranscriptome	399	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_111357751	F001229	GAG	MNSIVDSVLSMNLDVYRQFEVQDPDTGAILREWNYYKTIPCHAKGVISNSATTRSSDKQIFSNKYLNDQVIQVRTSEKLTSREKVTNIRDSDGNTIWNEINYPNETPTVFEVMGTTPVTDPFGRVIAYSSSMKRSENQQIGQ
Ga0211734_111357752	F001900	GGAG	LDNSGLLVQASSGLERMMHANQSGPLKDSTVAQVSAFVYYEAAVISKLTSSAKFKALFVNTVFNQVSEDFGHYIDALARSKPKSLHHVYEWQKAGDKTGRLFKVNKISEEGLSFRLDYNFLPSRSMVPSSNGKRRHMFKNKASIMEAGNPLVIRPKNSERLVFEIDGETVFMPKGQSVTVKRPGGSAATNQFTLAHSRFFSGRLVNESIKKSGFQRIFSSSLTKALRVPSNIKKVQYSFSPNLIRSQADEALAASFGGAM
Ga0211734_111357756	F005479	N/A	MPELIATLKALKKKEHGERKFLASLKGVDLGEYEEENEKGSSFEEIELRAAGIHANPNDVVSLQGRFAARAGFGIGEGLGYTKE