Scaffold Ga0211734_11067570

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_11067570
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 897
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y
F015420	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_110675702	F015420	N/A	MKKLIKYFTPVGAEEIAIAKAFVIVTSVTLSILFLFTFLKFIL
Ga0211734_110675703	F004234	N/A	MNFIDLYKNGNNYISNWTTDYDSDVYIAGTIEPFTYNASETDDGYLSLFILSDANLNLLKSKL
Ga0211734_110675704	F003327	N/A	MTEFTQLAIEVQNAIANGDYTHQKYLQFREWYFQNYEGSKRNAARDFKMFDLMYGLDVPIKNDSNEDV
Ga0211734_110675705	F003299	N/A	MKMYKVVFKTFDYWNGPVKLITRIVEAYDADHVKQLIQKNDDLI