NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10945439

Scaffold Ga0211734_10945439


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10945439 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)91414
Total Scaffold Genes88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (14.77%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030766Metagenome / Metatranscriptome184Y
F031491Metagenome / Metatranscriptome182Y
F041189Metagenome / Metatranscriptome160Y
F059904Metagenome133Y
F066792Metagenome / Metatranscriptome126Y
F073559Metagenome / Metatranscriptome120N
F078724Metagenome / Metatranscriptome116Y
F093871Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0211734_1094543931F066792N/AMATENASISAFKVWIFPSLVSLVSLLIWNDVNEIKADVKLLMAQSNIDKTRIDNLERQLFKAASVPVAPTRQLPEYQEVVAVLPDDKAFKLKTIKYDF
Ga0211734_1094543932F030766N/AMAKKFYAQKDALGFPVPGTMMSVDSTAKTPVDTIVIPAANVAPGAGQTVVAQPSGLRYFVRKDSKGNIVPNTLTISLKKPAGSVYEFKLLK
Ga0211734_1094543937F031491N/AMLAKNYKTKTHSMTSNTQQVTDVKELKRLKLETIRDFHQDLIDDLEIPRTDFNMKMPFYDKHGRMVVGIFSSEFRKEKGFFFELITRDLTPADAERKVYRVPVSSSYEEEYELNEKGSYLVPLEELRVVNPTSVAIKKTANFGPNQEQTLPSSLPKAPMQAYKAPATMEDAPYSEMTIRDYYAIQTGKPVSSKTWLNELIKSTK
Ga0211734_1094543939F041189N/AMFSTKGQEVKTTGGTAKSLQAGVVYAHIHSGQVRTSNKGDKKTLELVLEGPASEGFEGWAIDKNNPDGPKYTGQSSRVSATIWTDQFNDSNVSKNEIMFKLAVIASELGLRDQIDNISASSLEDWVEKAITILRYNNLYWFLKGTEEEYNGKTIIKLSLPKYKFVSADEAKLDKFDKNNQYHYKALQNKPVSSFEPVNSDFDM
Ga0211734_1094543944F078724N/AMIDSLYTKYFQKSRAFLFPALGIKRTSNFTPSGTYLSVEGLVSPEDIKLVCSFPDDESEGFKAFEQAMLLSNPLFLEVIPIQGYKLYVFDFQIYKADWFNFILGKYSKLSAVLKRAIKNYYGDKSSEYKYIETFLYPEKYFTLYAKLLDVEVKTLQETGELCDPCDMEKENLKIPVADLELLKKGT
Ga0211734_1094543957F093871N/AMIGPKYRLTRLNDGLVKEGMQVAWINYKLTGNSIYPRPAKGRGFVIYRSMGNYWQTTRVQSFKRLKGGIIMFTTENSDYKLEKLK
Ga0211734_1094543972F059904N/AMKISTTIKLPTYSCKLIVVVVESVSVAAEKLYKKYKIKDDFGGEAEGALIMPDIDSYYLLLGNQYLTHNTIAHELYHAVVRITEDRDITDEEAQAWLVGHLSGEIYKFLDKKKLVIKHG
Ga0211734_1094543985F073559N/AMEKISLKLFEFYNLDAELNGLTNQQTGEKIASGLIQEKLSLVTKYWLTELGKKVAAEKAAVEELKNDLIKKYGKEDDKGGISIPMVIDELDEEGQPKKDLDKDGNWFTKKVINPEFQSFELEFNNLLQTEKDLEYKAFTLEDFEKVETSENYGTFFKLIKVEETKVVPLN

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