NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10915062

Scaffold Ga0211734_10915062


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10915062 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6723
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (27.78%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F009135Metagenome / Metatranscriptome322Y
F010081Metagenome / Metatranscriptome308Y
F024047Metagenome / Metatranscriptome207N
F042296Metagenome / Metatranscriptome158Y
F099167Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0211734_1091506210F007859AGGAMKKLLIITLLCTGCETGMFLRYSYNRALEKLPPCSKVHAINNNYITYSMEKQSTNNVYTTHTNYYRAYYNIDGKITKTTKN
Ga0211734_1091506211F010081N/AMKEQIDSIIKKHCLKMQEVDHTKSIPMIVKQLDSIVYDMYRELYGLRDIRSNNYYLNSFTADNKKGHCC
Ga0211734_109150622F099167AGGAMNSRTIQRTIEIAKALCPLNLEHRCSHIAFLIRKNKITHIGTNSCRTHPETLKYDYKDHQLVGIHAELSVCMKSDKENLRDYKMVVLRVDRNGNLANSKPCCGCQSVIKQFNIGEVWHSDSNGTVVKNS
Ga0211734_109150625F024047GGAMTIVKTSEIIEWVKNAVEKKMIKELNIPNAKVYLSCDRPNPDVILETKNAEGDLQIVRFLII
Ga0211734_109150627F009135N/AMSNAKYYLQINLPPNFDDEDAESIRKDLMTYINSKNQYGAMYGPKASKKGITINKVLYRTNED
Ga0211734_109150629F042296N/AMNLFKSIIKWTGIGLFVCFSYAATSPEPIKLYVIYTYKFNERVIEKIFIKKENAQKYCDTYKESHNYTFEEITVSE
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