NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10511440

Scaffold Ga0211734_10511440


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10511440 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5044
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047578Metagenome / Metatranscriptome149Y
F048842Metagenome / Metatranscriptome147Y
F060730Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_1051144012F048842N/AMKNKAGVVLITLLPILLGAAALFGEIRCIYKMCTCNWEPIGKAEIVYTVGTFTGAGVVIGYLNIEDK
Ga0211734_105114406F047578N/AMKMICIDSSRKPSKVPIEQWIKEGEVYTVIKVVQMGLQDGKYGFLLKEVQMSADCFPYEYYNADRFIPLDARVANMEEEVVKEADLELI
Ga0211734_105114408F060730N/AMGRMKELYARIVYENDGHVPEEMTLADMARMKEIEIYNWEEYEREQEKIRVFRSKQENPREITKIAQVREFWEEELRKGQNRRLTKGKQ
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