Scaffold Ga0211734_10380228

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211734_10380228

Scaffold Ga0211734_10380228

Overview

Basic Information
Taxon OID	3300020159 Open in IMG/M
Scaffold ID	Ga0211734_10380228 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1295
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)		Depth (m)	0 to 12
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013761	Metagenome / Metatranscriptome	268	Y
F099310	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_103802281	F013761	N/A	MKIELCISRDRIPYIVEEIGADRIVVSEYNEDQDLITFEAGGQMDFLYMFHAGIRCGSDKMARVFSPNKSV
Ga0211734_103802283	F099310	N/A	MSKLYYYKDIIISFLLTLLFGVRVEGEPINLEYGVEVSKRTTVPSDQPDQFAWMKEHRVSSLHGVNQYVYL

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