Scaffold Ga0211734

Basic Information
Taxon OID	3300020159 Open in IMG/M
Scaffold ID	Ga0211734_10200209 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020159 Open in IMG/M

Scaffold ID

Ga0211734_10200209 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6636
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (40.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6636

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (40.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 12
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 12

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F006260	Metagenome / Metatranscriptome	377	Y
F009604	Metagenome / Metatranscriptome	315	Y
F023346	Metagenome / Metatranscriptome	210	Y
F039627	Metagenome / Metatranscriptome	163	N
F079812	Metagenome / Metatranscriptome	115	N
F091907	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_1020020910	F009604	N/A	MIKCGCGNEIHPERYELGYKICLSCGENSAKRSQKFGYLHFGHKTAGSIVITSKKAFDNYSKVSYRKGKASNMAYASRLSTSF
Ga0211734_1020020911	F039627	N/A	MTASFYKTVYQRKFNELPRWKKLAIVEDSERNNWSGLLTEFIKAVIEEAEKEYANSKPNVAAAPVEPKKDLENKIKKTFKKKI
Ga0211734_1020020913	F079812	N/A	MSTKYVTDSKSARIGYVKDSGSVIYAHGPNGENVGYYQKSTDTTFDRNGKRYGFGDLTNALVFEAARKI
Ga0211734_1020020914	F091907	N/A	MNKNKTGRKATAVNEITDRNFTIVDLININANVKAPTIRMHVKRSVTAGRYKISGSQKTGKRGKPSIVYTYDATPTVATTATVESTQTSAN
Ga0211734_102002094	F006260	N/A	METELTIKDKVINPIIIQHDDLKFDGKNITIPRYYIDSLCEYIKDYKTEGELQADIEDYQSFRNFLWDVQEFKNKGN
Ga0211734_102002096	F001840	GGA	MKDQDSIFLICDCFEHGLLVEKFKDEQEVSLSLFERGLNGRTLCWSERLRWCWQILRYGKPWSDFVILNTENQKQLKDFLG
Ga0211734_102002099	F023346	N/A	MKTEIDTVSKNIILTYARKIRNVQKEQIDPYIGLIENELITLFPELKDREDNALNWAYDILNAESNTEVVETLTRLEKIITNERKEKWVCNYCGKNTYNDDVEYLFGTNHIGCALEEDIKNREHSDPDYILDARLRKITELESELRNTKRELVNMELRLEHLRSDYPHEPTN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211734_10200209

Overview

Ecosystem & Geography

Associated Families

Sequences