Basic Information | |
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Taxon OID | 3300020159 Open in IMG/M |
Scaffold ID | Ga0211734_10200209 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6636 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (40.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 12 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001840 | Metagenome / Metatranscriptome | 627 | Y |
F006260 | Metagenome / Metatranscriptome | 377 | Y |
F009604 | Metagenome / Metatranscriptome | 315 | Y |
F023346 | Metagenome / Metatranscriptome | 210 | Y |
F039627 | Metagenome / Metatranscriptome | 163 | N |
F079812 | Metagenome / Metatranscriptome | 115 | N |
F091907 | Metagenome / Metatranscriptome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211734_1020020910 | F009604 | N/A | MIKCGCGNEIHPERYELGYKICLSCGENSAKRSQKFGYLHFGHKTAGSIVITSKKAFDNYSKVSYRKGKASNMAYASRLSTSF |
Ga0211734_1020020911 | F039627 | N/A | MTASFYKTVYQRKFNELPRWKKLAIVEDSERNNWSGLLTEFIKAVIEEAEKEYANSKPNVAAAPVEPKKDLENKIKKTFKKKI |
Ga0211734_1020020913 | F079812 | N/A | MSTKYVTDSKSARIGYVKDSGSVIYAHGPNGENVGYYQKSTDTTFDRNGKRYGFGDLTNALVFEAARKI |
Ga0211734_1020020914 | F091907 | N/A | MNKNKTGRKATAVNEITDRNFTIVDLININANVKAPTIRMHVKRSVTAGRYKISGSQKTGKRGKPSIVYTYDATPTVATTATVESTQTSAN |
Ga0211734_102002094 | F006260 | N/A | METELTIKDKVINPIIIQHDDLKFDGKNITIPRYYIDSLCEYIKDYKTEGELQADIEDYQSFRNFLWDVQEFKNKGN |
Ga0211734_102002096 | F001840 | GGA | MKDQDSIFLICDCFEHGLLVEKFKDEQEVSLSLFERGLNGRTLCWSERLRWCWQILRYGKPWSDFVILNTENQKQLKDFLG |
Ga0211734_102002099 | F023346 | N/A | MKTEIDTVSKNIILTYARKIRNVQKEQIDPYIGLIENELITLFPELKDREDNALNWAYDILNAESNTEVVETLTRLEKIITNERKEKWVCNYCGKNTYNDDVEYLFGTNHIGCALEEDIKNREHSDPDYILDARLRKITELESELRNTKRELVNMELRLEHLRSDYPHEPTN |
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