Basic Information | |
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Taxon OID | 3300020159 Open in IMG/M |
Scaffold ID | Ga0211734_10191531 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1700 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 12 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006842 | Metagenome | 363 | Y |
F011646 | Metagenome / Metatranscriptome | 288 | Y |
F018703 | Metagenome | 233 | Y |
F022400 | Metagenome | 214 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211734_101915311 | F022400 | AGG | MRRTTIERSQRTTLRLVSGGVGERASAYSPFGPVRAGLITTQRTSEDQVLTELLNSLERKIIELSIKSCEVLNIFLSDTKHLAKQKTSF |
Ga0211734_101915312 | F018703 | GAG | MSKQVEQRIETAKAQAVRQRNYRRARDRALARLSKAYPNVYRTYLEEEMEADENMGKKWLDIAGRTKSASNRTR |
Ga0211734_101915313 | F011646 | AGGAGG | MTNVVELRNGALKRIIFYEVADTQDIAIWGGESPQEALKWYRNSPTGSKIYVQEWLTDEEDAKQVSPQIEITPIVLSTIANCMERWSK |
Ga0211734_101915318 | F006842 | N/A | GQNICGRDSGMKATPAICGDHLVPISECDCLSYMREITRSAERLVELAKEREEISK |
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