Scaffold Ga0211734_10146036

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_10146036
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1494
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093349	Metagenome	106	N
F103253	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_101460361	F103253	N/A	IYLSKTGTGFQLAGADIISGFDAFVNADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIFEGYQRQSVLIGLVKNVDIPESTKEAILKNYLFDEEDLELEKNANS
Ga0211734_101460364	F093349	N/A	EIFEALLLMADIKKSAHNKNHSLENFTVESQVKFSSKCKICKKTVTVDLEAELPVSGEVLIVTCEKPERKKKIQISS