Scaffold Ga0194038_1009675

Overview

Basic Information

• Taxon OID: 3300020158
• Scaffold ID: Ga0194038_1009675
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-6m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3520
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.688
  • Long. (^o): -93.689

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031035	Metagenome	183	Y
F034802	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194038_10096751	F031035	GGA	MNKELITLRIQDLISKGKELEMQLHQINGAIQQCQWTLTEMEKPDAEEIDKPESV
Ga0194038_100967512	F034802	AGGAGG	MTKTEAHELLDARRGGLSVLPSAIDTALFLTGDLGGNALVFSEGMDKSLQQESQRCWQSKGYDVVAGTGRYYGSEEWFRANHGFKEADE