Scaffold Ga0194050_1058028

Overview

Basic Information

• Taxon OID: 3300020155
• Scaffold ID: Ga0194050_1058028
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L239-10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1048
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.663
  • Long. (^o): -93.723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043392	Metagenome / Metatranscriptome	156	N
F073094	Metagenome	120	N
F091353	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194050_10580281	F073094	N/A	MTTIAAIQGENWAAIGYDSRLTEDNSKIYTLPKDNGKVNRNGPYLIGAAGDMRAINILTHVFKPPAVSPNLYGAKLDKFISSVFIQDMKHCFEENSY
Ga0194050_10580282	F043392	AGTAGG	MEIVDKYYHSNGSAVPFIAALVDDPADGDTKIVIMFDERDFVAVLSLDSLLRDEDISARNNGYHGDKYEKLREDLWDGFLE
Ga0194050_10580283	F091353	N/A	KQLLPLKKLIEERLSVVRVDADIKDFVVGDRIVLNSNCGTKSLIGDEGTVVAIRRSKISITFDKPKGRFARTNSKGEIYSANAVVPISIVDKI