Scaffold Ga0197142_1075291

Overview

Basic Information

• Taxon OID: 3300020153
• Scaffold ID: Ga0197142_1075291
• Source Dataset Name: Sediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 60_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1117
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Nevada
• Coordinates
  • Lat. (^o): 40.6614
  • Long. (^o): -119.3661

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082733	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0197142_10752911	F082733	GGAG	MQFNPNTSHYASAIGAWLDSNFRDQFTATVAFMEKLKQRGAFKRGSAYLVQPLFATGNNTVAGVSNFNSPMSIPSDAGLSAVYTWSWYQGLTTVNAQEAAAINTEYEMVDLLEERLRSSVAQFGQVVANDLFSNTDASLGKIAGIPYAVDRPTTTANSFGGISR