Scaffold Ga0211736_11032105

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_11032105
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5040
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006182	Metagenome	379	Y
F010161	Metagenome	307	N
F105155	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1103210510	F006182	GAGG	LKINFRVTGTMEVPDDAIKHYDVAGELYALEFNDIMYMLQVCIVAEAGAGGFDILHQFEEMDNHNIKNLHYDDVNFIED
Ga0211736_1103210511	F105155	N/A	LKTSVAKKLAAEIKYLEWDLITFNFYHKSYKGYNFYKRIISLNYWQYTVASDITHCTFRVYEKEAKNAKLGNERTHLHLSDK
Ga0211736_110321052	F010161	N/A	MKKYSEVEKMTKKNKMLYDALIDYVSYFYNSSDMPESAKYNALKIFETLQDEKIDVNDFIPVMRQIQFSLDMITA