NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10993518

Scaffold Ga0211736_10993518


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10993518 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4500
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025754Metagenome / Metatranscriptome200Y
F048758Metagenome147Y
F049483Metagenome146N
F073240Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0211736_109935183F049483AGGAGMEITITVPESAIKAVKEYAKELTGKTPSKKELKKFFEQDIEGFYSDTFDEGIEGAVDNYF
Ga0211736_109935184F025754AGAAGVSYFYILPGPFRTGFGITGNYERREKDYTGSWGGVARFSYLFEGTSTHVKRLENIIKIQNRDMLWKIDEWETEWLDNGWSAEQLLEFVQELVAERHLKVVQIR
Ga0211736_109935185F048758AGGAGMIPVYQNVVRKPNVMQNRNPLKQSKSRIISLEDRMKELQTYKGWQKLLAEYRKQGIIIDPKLRPLIKMVKLKFLFIDEDIQRALDVKHCTNIASIGTFNPMYLQVIYCVKIPGKEEYHSVDAQHTATFVAAMIDAGLFAGESDWRNIEMPVLYIETTSKSFARKAFAIINGKGKKKISVWYEHRTKVMSARIDGSQDEDDQTALRKQVICETYDCYPVDKESNFVGLPGTFTHMHGLSLDDEILELACKFHNDYFHYDELDGSLFFMMEDLFKSFKAAKIKITDKFLGELAGILQGYFAGQAQFHSAVKGAHEDWGIHTYGYEVGWQDDAIAAVLVLLYQRLGGTQRIPKPLLDRFEMILDFIDDDIKALYEEVELA
Ga0211736_109935187F073240AGGAGMNNWDRDNLNFLLNADRETMEDWYHMATEDDFKYAAELFRRARVELAMTELALVDDEAVEDMTEACSVLARFRL
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