Scaffold Ga0211736_10978188

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10978188
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4464
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019436	Metagenome / Metatranscriptome	229	Y
F057196	Metagenome / Metatranscriptome	136	Y
F085212	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1097818811	F019436	AGGAG	MFYGKDMVAEDFDLLIHKLSEQELFLFEPMPNYKTGERWTDEFRIRDGHTKLADGSWVTIIKVTTWVEKLKKDTEDLYTSYQTNLQEIQLLKQQRREMEFGLRHAQKSLN
Ga0211736_109781883	F057196	AGGAG	MSVVFKSKAEVRAETEKQVALFLKKGGSVEIVKSRKAPKQTMRCKVSRGLVTGTSGFATGMPRKSTFALV
Ga0211736_109781885	F085212	GGAG	MRVFQETTKDWVGNVTNHIYYLTDNKEKMVAFYNVNTKQIKKFIKPIRFDTRHRTFKELKHI