Scaffold Ga0211736_10966622

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10966622
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5018
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003265	Metagenome / Metatranscriptome	496	Y
F004432	Metagenome / Metatranscriptome	438	Y
F050321	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_109666223	F004432	GAG	MVTAKKVPAKSAAKAPAKAPAKVAPVKRRIPKPKAEAVAPKPQPAKTPADTLGKIIGLIEWVDSPFKLLTVILLSFMAFAGYFAWDSRQVILQAIQNQDHMPQLVKQDDLVDPAKSLLKDVDGLVVLVHKANLATNSRTTVLAINADGSREKKIEGTVTSLFNASPDRNAAMVAMLNNEVLCEEFNPSSKVGEWGVKQGVKFMCRGSIPPDPGKFAGYIAIGFKDKPEDISALKTRINLASTDMSDE
Ga0211736_109666224	F050321	GGAGG	MITLNKWYPLVQPTHTARELAFDKAVAKVQEEYRYAMECLKQVRKTEDLELELYDKRARQNTIELGSFEDRRRFAIFV
Ga0211736_109666225	F003265	GGA	LVGAASKSPCLVTDFYGLSWINDPTMRHMELSRWLTTNGDNCSSEQLVGIWNNLALWAGAADSAELRAKVLYYYARARAREDK