Scaffold Ga0211736_10966384

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10966384
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6088
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004006	Metagenome / Metatranscriptome	457	Y
F018177	Metagenome / Metatranscriptome	236	Y
F033808	Metagenome / Metatranscriptome	176	Y
F038675	Metagenome / Metatranscriptome	165	Y
F071247	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1096638413	F038675	AGG	MKLYQSEEWLYRRYVVQKKTVTEIAIECKSSAMTIQRYLTKFGLIKKR
Ga0211736_109663842	F004006	AGGAG	MTDDVQGLITSISLNQVLVALLEEHTKLTVPTSKFLQVSSEEKELVIDYDENNLTFTFSLRVKD
Ga0211736_109663844	F018177	AGGA	MPNLNEFINKPEKVYKAELERIGGAKPCSKCDKDATEYFWDSVETTMSWECPDGHKNTFVVK
Ga0211736_109663846	F071247	GGAG	MGSNNKIPFNPTVIKDGRIVRIRKDGSIKADLGPYKRKSKKAK
Ga0211736_109663848	F033808	GAGG	MEMFLFSGIAIGFLIGYPFGLFIDKLDKKEKAKNGGR