Scaffold Ga0211736_10901400

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10901400
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3064
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001881	Metagenome / Metatranscriptome	622	Y
F004255	Metagenome / Metatranscriptome	446	Y
F008358	Metagenome / Metatranscriptome	334	Y
F013889	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1090140010	F008358	N/A	MNPYTIWFFIFTVLAYFIVTDYSVARAFYMLTQLARVQYEKAKWWIVHNPANPIVKYLMWRRAYKLAKEIQDEMERRSKTTNDNSTID
Ga0211736_109014003	F004255	N/A	MEITEKVKIFRNVWCCAYQRRWIYNGTEREHREHETVRMCLDMKNTKFYEFDSEKTNYLK
Ga0211736_109014005	F001881	GAGG	MSRAEEFMSAVWDQRNNQGADTEEKLVAAILSLASNYVISYTAQNDLIVLDKDDLLQLAQELVQ
Ga0211736_109014007	F013889	GAGG	MSRTYRKTEGMHSGALRFPHTFSEIKKLDGLLHEEDLEGLPFSGLNHIKAREHNLPTSWNDRVVSAYYQGDYHTA