Scaffold Ga0211736_10884431

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10884431
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1957
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006846	Metagenome / Metatranscriptome	363	Y
F020166	Metagenome / Metatranscriptome	225	Y
F088905	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_108844311	F088905	N/A	TNDIDTTPVDAAPVVEVKEEPKAEVKSAPVADATTDYWATAWANRGV
Ga0211736_108844315	F020166	GGA	MREPKIMKMDWRPLGYWPVYKDGKLTWEKDPDENVN
Ga0211736_108844316	F006846	AGGA	MRMLIEFVEKYLMRPKRLRDAIEAVVHENDELLRILSEYKEEGPTNLTWAEGDTWYGWTYNTKLNRYFFDDIGNKSLMGLWEDQWAREAEAEAK