NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10638341

Scaffold Ga0211736_10638341


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10638341 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5264
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043405Metagenome / Metatranscriptome156N
F101170Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0211736_106383413F043405N/AMPINNDILGIYKQVYVLTSGTAISYIVESANRNVSIDAQPKVLIAGSPKTRIMDIGGVTETISITAPMLIGGGAAYDGRALVGNKIIEILNPATATLPILKSASYSISEGGGSVSVTLESDGNAASGNSGFYIVNSTTPHPSLNPVGTGGSNTAAFGPTRVARFYDFRAKIGGRQYFIQEANVDVNVETSKAYFINPYDFTDPTAGYRYSGGGGTVIPSVLGGFGISWAYGSQFPHIGVNGITISGKGKGAVVVGSTYASETTAGITTQTAGKTILASTEDVTFALEIAGVSGNNMAGTTTWQDLIAGIGLSKSIINATAFSVSTGILTVEFDFMCYVV
Ga0211736_106383415F101170AGGAMLNNEFLTGTTLNIYAELKDESGYGVTTTGLAFYMTEPGGIGYTYYFGSGSGSGNSEPVQAGIATGIYYKQWTPSRTGVHKYSWKASGSIQATFKSFFDVKSGEW
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