Scaffold Ga0211736_10593047

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10593047
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13886
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (100.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002653	Metagenome	539	Y
F014143	Metagenome / Metatranscriptome	265	Y
F017452	Metagenome	240	Y
F033000	Metagenome	178	Y
F047010	Metagenome	150	Y
F061792	Metagenome	131	Y
F064494	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1059304710	F061792	AGGAG	MAYVCRNYEEALGTFAFRGAVRSKAWQPNERPLDPKPRVEHKLIEGSNEYGKYFDVKLYQTVMARFYEPKVENGKRVERRLYMGHSSQTSQQFMRHTLCVDLGLNIKWTAEHREEQTVWPIYTKAFMYDGDNDTPFSLDAVYVDGVLDTVQSEHTKHYRLVADTDVRKFKQRVAAHFEPYIMLAQMRMPEFKEMCDIDHRLGRKFGGEGFNRAYYMAMQELWESPEPRQQDIDVFFAMCQKAYDIIASKRGMEQPDFRVSGTWWSRSQSPKQDSTVDDLAKPIEMAEFRRAILDRIHKYVGSNSLKKPEEVKQFPKYSEYPRSNIHT
Ga0211736_1059304714	F014143	AGGAG	MNTKYLTHARSLFATYDAPPSTIRRYQRQWVQSIRRLGDKWLLAHHVQRLDA
Ga0211736_1059304717	F017452	AGGAG	MIQTAEDDEFDRIEHENEMKSGQPYHYDVYVSPSQRNQVLEEVAKEIEKFKAFGPDTIGSFSAYIRGMKT
Ga0211736_105930472	F047010	GGAG	MTKSFNRVAVFAVFNDADNESASFAEQLLALGIGSRADARPLAMEWASKKYNVAIKEGQRGMTFVKRDTDAEKAMNRVLQVCYPSADKPKSGKQTANKVDAVDAVLKKYQALTASEKRRFLKSI
Ga0211736_1059304722	F002653	AGGAGG	MSEAMSQEELEHRISKMSDEEQHHFKLLIHKLVMCYGEGKAQGVVIVGRAEDNIAGVVTLNCDEMEASQLMLAANDFFGFLNVLDAPPKENFN
Ga0211736_1059304723	F064494	AGGAG	MTSKEIYKLIEANGLTLHGDIEHFAALVADHVYAKYLETPEPKQAGTISITTPVPIGYLCENAVGHKYFRWKKPPSTYKPIPLYTKEKNS
Ga0211736_105930474	F033000	AGCAGG	MSLESKNCKACRPKRKPTSKLTKKDLHNKVQTGDLNAYLAQNLLIIKQRTAHNKQGMASRKRWLKVWKAELAEALKPITKEIVSARNAHLYAKDKGYVDKAEFYFRYHAILKHEKAHIELSYATNPRRPHSARWADYLADNVFTIVREMWAALPPVYKHSRIPLLIAYRDAFTQVNKDSKFVPPRSLAYLKGESK