Scaffold Ga0211736_10534524

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211736_10534524

Scaffold Ga0211736_10534524

Overview

Basic Information
Taxon OID	3300020151 Open in IMG/M
Scaffold ID	Ga0211736_10534524 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1623
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)		Depth (m)	4 to 10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052584	Metagenome	142	Y
F094806	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_105345243	F052584	AGGAG	MNYKWSQPYPGESRYERLFRAQRILQLSRHAMLLDTVEPVKDLTEAKEYLKKFQLGDK
Ga0211736_105345245	F094806	AGGA	MNKQADLSDLATEAMVASIPAKPVQPQAETPCADKDTACNRRWIDAFSDCC

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