Scaffold Ga0211736_10343526

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211736_10343526

Scaffold Ga0211736_10343526

Overview

Basic Information
Taxon OID	3300020151 Open in IMG/M
Scaffold ID	Ga0211736_10343526 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3238
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (62.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)		Depth (m)	4 to 10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054874	Metagenome / Metatranscriptome	139	Y
F103267	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1034352610	F054874	GGAG	MPNEVKGGTFAPADMELLKRSLHCYLDMLSRIEESERDPSPELTKVANLLHRIGRIA
Ga0211736_1034352611	F103267	GGAGG	MEVELFAFPTMENPKAVEDTFCDLLNAKRNGEPLPVEALDWMDTANNWLLESK

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