NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10336907

Scaffold Ga0211736_10336907


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10336907 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2546
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012774Metagenome / Metatranscriptome277Y
F012978Metagenome / Metatranscriptome275Y
F017132Metagenome242Y
F041601Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_103369071F012978N/AKMKFNKTDDELKHMSEDELFEYLDAKAAHLKQYTSPLSSYKTKKFASIGAAISQTEFDYDSVKQIAKENEQKGYEKFIKDKNKK
Ga0211736_103369075F012774N/AMKETPIILHIDLGNQSVTEWLKENQYIIFSELVRYSKKLIKENLDFIQAIMVSNLHDNIVFIIKRDNLKLTLDKAFDFFMDIEEYEKCAEIRDLNILIQNLQNEATNIKVSKPNQRKSKINR
Ga0211736_103369076F041601N/AMKQQILKLVNQIKENLKSIDKDGVSHPLVDDIYEKLELIEDEIYEDDAAADALSFEDEDY
Ga0211736_103369078F017132N/AMIRKMETAKVGEDLYEIIKKLPIQRFTQEVTGEYAEALKKYYGVEKILKFHQTQEYLFVNLIEELQIQTNDNKETS

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